PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000126-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 304aa    MW: 33106.9 Da    PI: 10.2333
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000126-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08534130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +++WT+eE+  l+ +v ++G g W+tI + 
  AHYPO_000126-RA  5 KQKWTAEEEAALKAGVLKHGAGKWRTILKD 34
                     79*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.395150IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-8435IPR009057Homeodomain-like
PfamPF002491.2E-5533IPR001005SANT/Myb domain
SuperFamilySSF466897.33E-10649IPR009057Homeodomain-like
CDDcd116607.06E-13645No hitNo description
SuperFamilySSF467857.62E-13110203IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.8E-10111189IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.108.8E-12112201IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.695113200IPR005818Linker histone H1/H5, domain H15
PfamPF005384.7E-5118187IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGAGKWRT ILKDPEFSED KWRNMSVMTT GFGSREKSRV  60
APKRISIPST HVKQEENVTS ASDVPLSDEE TPDVKPVVTP SASIQISSAS KRSIVRLDNL  120
ILEAIVNLKE PGGSNKTAIA SYIEAAPKRR IALVPPKDQY WAPSDFKRVL SAKLKFLTSS  180
GKLIKVKRKY QISQSFSIPE KRNLSMLGQE GRQLSLPKID RDELSMLKSQ IDLELAKMRS  240
MTPEEAAAAA ARAVTEAEIA IAEAEQAVRE ADEAEADAQA AQAFADAAAK ILRARNASKT  300
TRA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672702.11e-130PREDICTED: telomere repeat-binding factor 1
RefseqXP_010672703.11e-130PREDICTED: telomere repeat-binding factor 1
SwissprotQ8VWK42e-77TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A0J8CTS61e-130A0A0J8CTS6_BETVU; Uncharacterized protein
STRINGPOPTR_0009s09020.11e-89(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-77telomere repeat binding factor 1